PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010938177.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 152aa    MW: 16640.9 Da    PI: 8.2211
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010938177.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.52.7e-096485627
                    -SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
                    C++f rtGtCkyGd Ck+ H++
  XP_010938177.1 64 CHHFVRTGTCKYGDACKYFHPK 85
                    ********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004511.6E-5338IPR003604Zinc finger, U1-type
SuperFamilySSF576675.42E-16445No hitNo description
PfamPF062205.0E-12537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010314.3145886IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-46085IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-76288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-76387IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-76385IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MPLGKYYCDY CDKQFQDTPS ARKRHLQGIQ HQRARALWYD SLKAEPHGGG PLLQPDGSLA  60
KGVCHHFVRT GTCKYGDACK YFHPKQDVAS PTPAVSGLNF VETVQSPNFL GNQILSGGMV  120
LDHTGVSWGN IPPSLRPPPE GGYPPLPLVD WG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010938177.11e-111PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1
SwissprotQ0JP117e-57C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLM0U7G95e-77M0U7G9_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP08590_0011e-76(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126172326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.12e-28C3H family protein